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Chromatin Immunoprecipitation (ChIP)
Antigen-Antibody Specific Applications
Androgen Response Genes
Identification of novel androgen response genes
in prostate cancer cells by coupling chromatin immunoprecipitation
and genomic microarray analysis.
Oncogene. 2007 Feb 5; [Epub ahead of print]
PMID: 17297473 [PubMed - as supplied by publisher]
CENP-A
Lo AW, Magliano DJ, Sibson MC, Kalitsis P, Craig JM, Choo KH.
A novel chromatin immunoprecipitation and array
(CIA) analysis identifies a 460-kb CENP-A-binding neocentromere DNA.
Genome Res. 2001 Mar;11(3):448-57.
PMID: 11230169 [PubMed - indexed for MEDLINE]
Chromosomal Proteins
Mapping chromosomal proteins in vivo by
formaldehyde-crosslinked-chromatin immunoprecipitation.
Trends Biochem Sci. 2000 Mar;25(3):99-104.
Review.
PMID: 10694875 [PubMed - indexed for MEDLINE]
DAF-16
Oh SW, Mukhopadhyay A, Dixit BL, Raha T, Green MR, Tissenbaum HA.
Identification of direct DAF-16 targets
controlling longevity, metabolism and diapause by chromatin
immunoprecipitation.
Nat Genet. 2006 Feb;38(2):251-7. Epub 2005 Dec
25.
PMID: 16380712 [PubMed - indexed for MEDLINE]
deltaNp63
Novel in vivo targets of deltaNp63 in
keratinocytes identified by a modified chromatin immunoprecipitation
approach.
BMC Mol Biol. 2007 May 23;8(1):43 [Epub ahead
of print]
PMID: 17521434 [PubMed - as supplied by publisher]
Estrogen Receptor
Lin Z, Reierstad S, Huang CC, Bulun SE.
Novel estrogen receptor-alpha binding sites and
estradiol target genes identified by chromatin immunoprecipitation
cloning in breast cancer.
Cancer Res. 2007 May 15;67(10):5017-24.
PMID: 17510434 [PubMed - in process]
Chromatin immunoprecipitation assay detects
ERalpha recruitment to gene specific promoters in uterus.
Biol Proced Online. 2006;8:69-76. Epub 2006
Jul 31.
PMID: 17033697 [PubMed - in process]
Jin VX, Leu YW, Liyanarachchi S, Sun H, Fan M, Nephew KP, Huang TH,
Davuluri RV.
Identifying estrogen receptor alpha target genes
using integrated computational genomics and chromatin
immunoprecipitation microarray.
Nucleic Acids Res. 2004 Dec 17;32(22):6627-35.
Print 2004.
PMID: 15608294 [PubMed - indexed for MEDLINE]
Glucocorticoid Receptor
Wang JC, Derynck MK, Nonaka DF, Khodabakhsh DB, Haqq C, Yamamoto KR.
Chromatin immunoprecipitation (ChIP) scanning
identifies primary glucocorticoid receptor target genes.
Proc Natl Acad Sci U S A. 2004 Nov
2;101(44):15603-8. Epub 2004 Oct 22.
PMID: 15501915 [PubMed - indexed for MEDLINE]
Histone
Eberhardy SR, D'Cunha CA, Farnham PJ.
Direct examination of histone acetylation on Myc
target genes using chromatin immunoprecipitation.
J Biol Chem. 2000 Oct 27;275(43):33798-805.
PMID: 10931841 [PubMed - indexed for MEDLINE]
Mycobacterial Sigma Factor
Rodrigue S, Brodeur J, Jacques PE, Gervais AL, Brzezinski R,
Gaudreau L.
Identification of mycobacterial sigma factor
binding sites by chromatin immunoprecipitation assays.
J Bacteriol. 2007 Mar;189(5):1505-13. Epub
2006 Dec 8.
PMID: 17158685 [PubMed - indexed for MEDLINE]
NF-kappa B
Two-step cross-linking method for identification
of NF-kappaB gene network by chromatin immunoprecipitation.
Biotechniques. 2005 Nov;39(5):715-25.
PMID: 16315372 [PubMed - indexed for MEDLINE]
PR-1a and CaMV 35S Promoter
Butterbrodt T, Thurow C, Gatz C.
Chromatin immunoprecipitation analysis of the
tobacco PR-1a- and the truncated CaMV 35S promoter reveals
differences in salicylic acid-dependent TGA factor binding and
histone acetylation.
Plant Mol Biol. 2006 Jul;61(4-5):665-74.
PMID: 16897482 [PubMed - indexed for MEDLINE]
Protein Kinase C beta
Hug BA, Ahmed N, Robbins JA, Lazar MA.
A chromatin immunoprecipitation screen reveals
protein kinase Cbeta as a direct RUNX1 target gene.
J Biol Chem. 2004 Jan 9;279(2):825-30. Epub
2003 Oct 15.
PMID: 14561740 [PubMed - indexed for MEDLINE]
STAT5
Nelson EA, Walker SR, Alvarez JV, Frank DA.
Isolation of unique STAT5 targets by chromatin
immunoprecipitation-based gene identification.
J Biol Chem. 2004 Dec 24;279(52):54724-30.
Epub 2004 Oct 20.
PMID: 15498775 [PubMed - indexed for MEDLINE]
Transactivators
Hearnes JM, Mays DJ, Schavolt KL, Tang L, Jiang X, Pietenpol JA.
Chromatin immunoprecipitation-based screen to
identify functional genomic binding sites for sequence-specific
transactivators.
Mol Cell Biol. 2005 Nov;25(22):10148-58.
PMID: 16260627 [PubMed - indexed for MEDLINE]
Transcription Factors
A comparative analysis of genome-wide chromatin
immunoprecipitation data for mammalian transcription factors.
Nucleic Acids Res. 2006;34(21):e146. Epub 2006
Nov 7.
PMID: 17090591 [PubMed - indexed for MEDLINE]
Girard F, Joly W, Savare J, Bonneaud N, Ferraz C, Maschat F.
Chromatin immunoprecipitation reveals a novel
role for the Drosophila SoxNeuro transcription factor in axonal
patterning.
Dev Biol. 2006 Nov 15;299(2):530-42. Epub 2006
Aug 10.
PMID: 16979619 [PubMed - indexed for MEDLINE]
Use of chromatin immunoprecipitation (ChIP) to
detect transcription factor binding to highly homologous promoters
in chromatin isolated from unstimulated and activated primary human
B cells.
Biol Proced Online. 2006;8:44-54. Epub 2006
Apr 21.
PMID: 16799696 [PubMed - in process]
Chromatin immunoprecipitation identifies
photoreceptor transcription factor targets in mouse models of
retinal degeneration: new findings and challenges.
Vis Neurosci. 2005 Sep-Oct;22(5):575-86.
PMID: 16332268 [PubMed - indexed for MEDLINE]